MATLAB APPLICATION DEPLOYMENT - WEB EXAMPLE GUIDE Manuale Utente Scaricare il pdf (Pagina 3)

Table of Contents

Introduction ....................................................................................................................................................................4

Writing Modules for GenePattern...................................................................................................................................4

Guidelines for Writing Programs for GenePattern Modules.......................................................................................4

Creating Tasks ..........................................................................................................................................................5

Tutorial: Creating a Task ......................................................................................................................................6

Writing MATLAB Modules for GenePattern....................................................................................................................8

Two Approaches: Direct and Compiled.....................................................................................................................9

MATLAB Versions.....................................................................................................................................................9

Adapting Your MATLAB Code...................................................................................................................................9

Compiling Your MATLAB Code...............................................................................................................................10

Distributing Your MATLAB Code.............................................................................................................................10

Direct Approach Distribution ...............................................................................................................................10

Compiled Approach Distribution .........................................................................................................................11

Example: Deploying a Compiled MATLAB Application............................................................................................13

Writing the M-file.................................................................................................................................................14

Adapting the M-file..............................................................................................................................................14

Compile the M-file...............................................................................................................................................14

Prepare the GenePattern Server ........................................................................................................................14

Create the Launcher Script.................................................................................................................................15

Create the GenePattern Module.........................................................................................................................15

Save the Module and Test It...............................................................................................................................16

Debugging (Linux Only)......................................................................................................................................16

Using GenePattern from Java......................................................................................................................................16

Getting Started in Java............................................................................................................................................16

GenePattern Java Library .......................................................................................................................................17

Running a Program .................................................................................................................................................17

Using LSIDs from Java............................................................................................................................................18

Using GenePattern from MATLAB ...............................................................................................................................18

Getting Started in MATLAB .....................................................................................................................................18

GenePattern MATLAB Library.................................................................................................................................18

Running a Program .................................................................................................................................................19

Using LSIDs from MATLAB.....................................................................................................................................20

Using GenePattern from R...........................................................................................................................................20

Getting Started in R.................................................................................................................................................20

Accessing GenePattern from R...............................................................................................................................21

Running a Program .................................................................................................................................................21

Using LSIDs from R.................................................................................................................................................22

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MATLAB APPLICATION DEPLOYMENT - WEB EXAMPLE GUIDE Manuale Utente Pagina 3

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