MATLAB APPLICATION DEPLOYMENT - WEB EXAMPLE GUIDE Manuale Utente Scaricare il pdf (Pagina 15)

2. Copy the zip file to your GenePattern server (if it is a different machine) and install it into a directory. For

example, add a directory,

matlab, under the GenePattern server directory and install the library files in

MCRInstaller.zip into that directory:

cd GenePatternServer

mkdir matlab

cd matlab

cp <path to mcrinstaller.zip>MCRInstaller.zip .

unzip MCRInstaller.zip

Create the Launcher Script

Create the launcher script that sets the environment variables and then calls the MATLAB application.

Windows

Create the launcher script as a batch file that sets the PATH variable for the environment and then calls the MATLAB

application. To do so, in a text editor, create the following

mllaunch.bat file:

set LIBDIR=%1

set PATH=%LIBDIR%;%PATH%

writeToFile %2 %3

Linux

Create the launcher script as an .sh file that sets the PATH and LD_LIBRARY_PATH variables for the environment,

ensures that the application is executable, and then calls the MATLAB application. To do so, in a text editor, create

the following

mllaunch.sh file:

#!/bin/csh

export MCRROOT=/home/username/GenePatternServer/matlab/v70

export

LD_LIBRARY_PATH=$1:$MCRROOT/runtime/glnx86:$MCRROOT/sys/os/glnx86:$MCRROOT/sys

/java/jre/glnx86/jre1.4.2/lib/i386/client:$MCRROOT/sys/java/jre/glnx86/jre1.4.

2/lib/i386:$MCRROOT/sys/opengl/lib/glnx86

export PATH=$1:$PATH

chmod a+x $1/testTwo

writeToFile $2 $3

Note that the MCR_ROOT variable is set to the v70 directory, which you created by unzipping

MCRInstaller.zip.

Mac OS X

Create the launcher script as an .sh file that sets the LD_LIBRARY_PATH and DYLD_LIBRARY_PATH variables for

the environment, ensures that the application is executable, and then calls the MATLAB application. To do so, in a

text editor, create the following

mllaunch.sh file:

#!/bin/sh

export MCR_ROOT=/Volumes/os9/gpserv

export LD_LIBRARY_PATH=$1:/Volumes/os9/matlab7.2/sys/os/mac:

/Volumes/os9/matlab7.2/bin/mac/

export DYLD_LIBRARY_PATH=$LD_LIBRARY_PATH

export PATH=$1:$PATH

chmod a+x $1/writeToFile

writeToFile $2 "$3"

Create the GenePattern Module

In the GenePattern Web Client, create a task that executes the launcher script.

Windows

● For the command line, enter the following:

sh <libdir>mllaunch.bat <libdir> <fname> <txt>

● Define two parameters:

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