MATLAB APPLICATION DEPLOYMENT - WEB EXAMPLE GUIDE Manuale Utente Scaricare il pdf (Pagina 16)

▪ <fname> for the output file name

▪ <txt> for the text to write to the file

● Include the following support files:

▪ mllaunch.bat

▪ whatToWrite.exe

▪ whatToWrite.ctf

Linux or Mac OS X

● For the command line, enter the following:

sh <libdir>mllaunch.sh <libdir> <fname> <txt>

● Define two parameters:

▪ <fname> for the output file name

▪ <txt> for the text to write to the file

● Include the following support files:

▪ mllaunch.sh

▪ whatToWrite

▪ whatToWrite.ctf

Save the Module and Test It

Save the task and execute it. The task should create two files:

● A stdout file that contains execution information.

● A file with the name and text that you specified.

Debugging (Linux Only)

If the following error appears in the stdout file, you have not correctly set the path to the libraries that you installed

from

MCRInstaller.zip:

error while loading shared libraries: libmwmclmcrrt.so.7.0: cannot open shared

object file: No such file or directory

Double check the path. If it is correct, you may be using a different Unix shell than the one used in this example.

Check that the mllaunch.sh file uses the correct command (export in this example) to set PATH and

LD_LIBRARY_PATH.

Using GenePattern from Java

Using Java as a GenePattern client allows you to run GenePattern tasks and visualizers from within a Java

application. This section describes how you can use the GenePattern Java library to run GenePattern analyses as

easily as calling a routine. It contains the following topics:

●

Getting Started in Java

●

GenePattern Java Library

● Running a Program

●

Using LSIDs from Java

Getting Started in Java

If you are not familiar with Java, see the http://java.sun.com website, which provides downloadable programs,

samples, tutorials, and book suggestions.

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MATLAB APPLICATION DEPLOYMENT - WEB EXAMPLE GUIDE Manuale Utente Pagina 16